Showing : ensembl release • reset
5
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Correct version of EnsDb.Hsapiens for ensembl transcriptome
ensembldb ensembl release rnaseq salmon tximport
7.0 years ago emmak ▴ 20
0
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2
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1.6k
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Txtimport for kallisto on hg38 v87
txtimport deseq2 ensembl release
updated 7.8 years ago by 67k • written 7.8 years ago by ▴ 40
1
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1
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1.4k
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News: Ensembl release 86 is out!
ensembl biomart ensembl release ensembl mart News
8.3 years ago Thomas Maurel ▴ 800
1
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0
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1.4k
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News: Ensembl release 85 is out!
ensembl biomart release85 ensembl release mart News
8.5 years ago Thomas Maurel ▴ 800
4
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9
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3.4k
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News: Ensembl release 84 is out!
ensembl mart release84 biomart ensembl release News
updated 8.8 years ago by ▴ 20 • written 8.9 years ago by ▴ 800
0
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0
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1.8k
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News: Ensembl 83 is out!
ensemble mart ensembl biomart ensembl release News
9.1 years ago amonida ▴ 20
6 results • Page 1 of 1
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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280
`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…
Answer: affymetrix by James W. MacDonald 67k
When posting it helps to think about the people you are asking for help. Your post is hidden within the dummy text that comes up when you i…
Answer: Problems with GSEA by Guido Hooiveld ★ 4.1k
The error `Duplicate values in names(stats) not allowed` (from `fgsea` that is used under the hood) shows that the input is not unique; in …
Answer: Error compiling Rbowtie2 in R-4.4 (Bioconductor 3.20 and probably 3.19) by ja.garcia • 0
It has been fixed by the Rbowtie2 maintainers in version 2.12.2. Thank you for the quick fix!
Comment: contrast matrix design for a continuous variable by dtzhu337 • 0
Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…
Votes
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
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Popular Question to Gordon Smyth 52k
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